Lindblad Guests exploring by a panga watch a California gray whale in Magdalena Bay, Baja California Sur, Mexico.
Lindblad Guests exploring by a panga watch a California gray whale in Magdalena Bay, Baja California Sur, Mexico.
ExpeditionsBaja California: Observing the Whales of Magdalena Bay

Baja California: Observing the Whales of Magdalena Bay

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Enjoy several days in the company of majestic gray whales in Baja California’s Magdalena Bay, one of the best places in the world to encounter gray whale mothers and their calves. On this compact trip, we explore aboard the only expedition ship in the region small and nimble enough to anchor inside the bay’s sheltered waters, giving you unparalleled access to this busy whale nursery. Set out in local pangas for up-close encounters with these curious cetaceans, kayak mangrove forests, hike desert islands, and look for pelicans and ospreys while soaking up the sun on pristine beaches. 

Highlights

Traveler, Isabella Lindblad, walking the Magnificent Magdalena Bay Sand Dunes in Baja California
  • Search for gigantic gray whale mothers and their calves in the nursery waters of Magdalena Bay, delighting in up-close encounters

  • Kayak and paddleboard in stunning mangrove forests, or beachcomb along endless stretches of sand

  • Go hiking and fat-tire biking across diverse landscapes—from windswept dunes to cactus forests—keeping an eye out for rambling coyotes and soaring eagles

  • Scan the skies for myriad bird species, like diving pelicans and magnificent frigatebirds

  • Extend your expedition with a history and whale-watching experience in Loreto, or explore culture and cuisine in Todos Santos and La Paz

From

$2,524

/ per person

Does not include any flights

duration
6 Days
starts at
San Carlos, Mexico
ends at
San Carlos, Mexico

View our brochure for more details

2026-2027 Voyages

Baja California 2026-27

Talk to an Expedition Specialist1.800.397.3348

From

$2,524

/ per person

duration
6 Days
starts at
San Carlos, Mexico
ends at
San Carlos, Mexico

View our brochure for more details

2026-2027 Voyages

Baja California 2026-27

From

$2,524

/ per person

duration
6 Days
starts at
San Carlos, Mexico
ends at
San Carlos, Mexico

View our brochure for more details

2026-2027 Voyages

Baja California 2026-27

Itinerary

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Starts atSan Carlos, Mexico
Ends atSan Carlos, Mexico

Day 1

Loreto, Mexico / San Carlos / Embark Ship

Arrive in Loreto by early afternoon for the transfer to San Carlos, a small waterside town where the mountains meet the Gulf of California. Embark the ship this evening in time for cocktails and an introduction to the staff and crew. You may opt for a pre-voyage extension exploring the region’s culture and cuisine.

Arrival Time: Arrive before 2:30 p.m. local time.
Arrival City: Loreto, Mexico

Meals Included: Dinner

Day 1

Loreto, Mexico / San Carlos / Embark Ship

Arrive in Loreto by early afternoon for the transfer to San Carlos, a small waterside town where the mountains meet the Gulf of California. Embark the ship this evening in time for cocktails and an introduction to the staff and crew. You may opt for a pre-voyage extension exploring the region’s culture and cuisine.

Arrival Time: Arrive before 2:30 p.m. local time.
Arrival City: Loreto, Mexico

Meals Included: Dinner

Days 2-5

Magdalena Bay

Below is a selection of locales you may visit during your expedition.  

Bahía Almejas 

The southernmost of the waters you’ll explore, Bahía Almejas, or Bay of Clams, is known for its many seabird species and its remarkably active gray whale populations. With luck, you’ll have the opportunity to view a large frigatebird colony before heading out on a whale-watching trip. Board small, open boats called pangas, operated by pangueros—expert local guides. The areas around Magdalena Bay are primarily supported by whale-watching and small-scale, artisanal fishing; the pangueros make their livings as fishermen outside the gray whale season and have a deep familiarity with these rich waters.  

Isla Magdalena / Sand Dollar Beach 

Explore ever-shifting sand dunes on a cross-island walk to one of the most pristine beaches in the Pacific. Take in the impressive desert plant life of this exotic terrain, home to five species of cacti. Tally treasures offered up by the ocean on the aptly named Sand Dollar Beach, and capture images of your discoveries with the help of your certified photo instructor.  

Puerto Magdalena 

Wake up anchored at this small fishing village, surrounded by the open Pacific to the west, Magdalena Bay to the east, mangroves to the north and mountains to the south. With a population of 85, Puerto Magdalena is the only inhabited area of Isla Magdalena. Meet a local resident and learn how his family has lived off the area since the 1800s—from lichen harvesting to managing an open-air cantina, where you’ll enjoy local bites and beverages. Time permitting, visit the desalinization plant that supplies fresh water to the community. Get active on a fat-tire bike ride or, conditions and tide permitting, a kayaking excursion through the mangroves in Man of War Cove.  

Hull Canal 

Take in the scenery and watch for pods of bow-riding dolphins as the ship navigates this winding canal. Within its narrow channels, bordered by mangroves and sand dunes and filled with abundant wildlife, join your keen-eyed naturalists on deck to spot species and hear expert commentary. Weather permitting, explore the vast mangrove system by kayak and Zodiac. Bird-watching can be excellent here, with various seabirds and shorebirds patrolling the beaches as they fatten up and prepare for long journeys to their summer breeding grounds. You might see anything from diving pelicans and wheeling cormorants to terns, great blue herons, ibis, whimbrels and willets.  

Boca de Soledad 

Settle in for unforgettable experiences in this tranquil lagoon. Each winter, during their long migration, gray whales travel south from their Arctic feeding grounds to breed and give birth to their calves in these sheltered waters. Venture out in local pangas to view the numerous mother-calf pairs that thrive in the region. With luck, enjoy up-close interactions with these curious creatures.  

Meals Included: Breakfast, Lunch, Dinner

Days 2-5

Magdalena Bay

Below is a selection of locales you may visit during your expedition.  

Bahía Almejas 

The southernmost of the waters you’ll explore, Bahía Almejas, or Bay of Clams, is known for its many seabird species and its remarkably active gray whale populations. With luck, you’ll have the opportunity to view a large frigatebird colony before heading out on a whale-watching trip. Board small, open boats called pangas, operated by pangueros—expert local guides. The areas around Magdalena Bay are primarily supported by whale-watching and small-scale, artisanal fishing; the pangueros make their livings as fishermen outside the gray whale season and have a deep familiarity with these rich waters.  

Isla Magdalena / Sand Dollar Beach 

Explore ever-shifting sand dunes on a cross-island walk to one of the most pristine beaches in the Pacific. Take in the impressive desert plant life of this exotic terrain, home to five species of cacti. Tally treasures offered up by the ocean on the aptly named Sand Dollar Beach, and capture images of your discoveries with the help of your certified photo instructor.  

Puerto Magdalena 

Wake up anchored at this small fishing village, surrounded by the open Pacific to the west, Magdalena Bay to the east, mangroves to the north and mountains to the south. With a population of 85, Puerto Magdalena is the only inhabited area of Isla Magdalena. Meet a local resident and learn how his family has lived off the area since the 1800s—from lichen harvesting to managing an open-air cantina, where you’ll enjoy local bites and beverages. Time permitting, visit the desalinization plant that supplies fresh water to the community. Get active on a fat-tire bike ride or, conditions and tide permitting, a kayaking excursion through the mangroves in Man of War Cove.  

Hull Canal 

Take in the scenery and watch for pods of bow-riding dolphins as the ship navigates this winding canal. Within its narrow channels, bordered by mangroves and sand dunes and filled with abundant wildlife, join your keen-eyed naturalists on deck to spot species and hear expert commentary. Weather permitting, explore the vast mangrove system by kayak and Zodiac. Bird-watching can be excellent here, with various seabirds and shorebirds patrolling the beaches as they fatten up and prepare for long journeys to their summer breeding grounds. You might see anything from diving pelicans and wheeling cormorants to terns, great blue herons, ibis, whimbrels and willets.  

Boca de Soledad 

Settle in for unforgettable experiences in this tranquil lagoon. Each winter, during their long migration, gray whales travel south from their Arctic feeding grounds to breed and give birth to their calves in these sheltered waters. Venture out in local pangas to view the numerous mother-calf pairs that thrive in the region. With luck, enjoy up-close interactions with these curious creatures.  

Meals Included: Breakfast, Lunch, Dinner

Day 6

San Carlos / Disembark Ship / Loreto

After breakfast, disembark the ship and transfer to the Loreto airport for flights home or to Loreto's city center to begin your two-night history and whale-watching extension.

Departure Time: Depart after 1:00 p.m. local time.
Departure City: Loreto, Mexico

Meals Included: Breakfast

Day 6

San Carlos / Disembark Ship / Loreto

After breakfast, disembark the ship and transfer to the Loreto airport for flights home or to Loreto's city center to begin your two-night history and whale-watching extension.

Departure Time: Depart after 1:00 p.m. local time.
Departure City: Loreto, Mexico

Meals Included: Breakfast

Itinerary Note: Routing and stops may be subject to modification and/or permitting.

Video

Expedition Spotlight - The Whales of Magdalena Bay

  • May 2024

In this Expedition Spotlight, Naturalist and Certified Photo Instructor Gemina Garland-Lewis shares more about these incredibly curious whales and why encountering them in the wild brings her “tears of joy.”

Dates & Rates

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    Ships

    Guests explore by zodiac from the ship National Geographic Sea Bird, Tongass National Forest, Southeast Alaska, USA

    National Geographic Sea Bird

    GUESTS 62

    CABINS 31

    DECKS 3

    National Geographic Sea Bird accommodates just 62 guests in 31 outside cabins. With a shallow draft and small size, she can easily reach places inaccessible to larger ships.

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    A view of the ship National Geographic Sea Lion in Alaska, USA.

    National Geographic Sea Lion

    GUESTS 62

    CABINS 31

    DECKS 3

    National Geographic Sea Lion accommodates just 62 guests in 31 outside cabins. With a shallow draft and small size, she can easily reach places inaccessible to larger ships.

    VIEW SHIP

    Expedition Extensions

    A Humpback whale dives showing its fluke in Loreto Bay National Marine Park, Gulf of California, Baja California Sur, Mexico
    Extension
    Post-Voyage

    Loreto History and Whale-Watching Extension

    Duration3 Days

    Starting from

    $1,590

    / per person

    Explore
    Cathedral of La Paz,La Paz, Baja California Sur, Mexico
    Extension
    Pre-Voyage

    Baja California Culture and Cuisine Pre-Voyage Extension

    Duration3 Days

    Starting from

    $1,550

    / per person

    Explore
    Small fishing boats called pangas in the inner harbor in Loreto, Baja California Sur, Gulf of California, Mexico.
    Extension
    Pre-Voyage

    One-Night Loreto Pre-Voyage Extension

    Duration2 Days

    Starting from

    $950

    / per person

    Explore

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    Captain Andrew Cook with guests and Staff on the Bridge of National Geographic Venture, Baja California, Mexico

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    2026-2027 Voyages

    Baja California 2026-27

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